- Whole Foods Market BelMar (Lakewood)
- Whole Foods Market Bradburn (Westminster)
- Whole Foods Market Castle Rock
- Whole Foods Market Colfax (Golden/Lakewood)
- Whole Foods Market Colorado Blvd (Denver)
- Whole Foods Market Cherry Creek (Denver)
- Whole Foods Market Fort Collins
- Whole Foods Market Governor's Ranch (Littleton)
- Whole Foods Market Highlands Ranch
- Whole Foods Market Ideal Market (Boulder)
- Whole Foods Ideal Market (Denver)
- Whole Foods Market Longmont
- Whole Foods Market Pearl (Boulder)
- Whole Foods Market Pikes Peak (Colorado Springs)
- Whole Foods Market Southglenn (Centennial)
- Whole Foods Market Superior
- Whole Foods Market Table Mesa (Boulder)
- Whole Foods Market Tamarac (South Denver)
- Whole Foods Market Union Station (Denver)